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Mitochondrial dna sequence analysis software#
(2005) Arlequin (Version 3.0): An Integrated Software Package for Population Genetics Data Analysis. (1981) Sequence and Organization of Human Mitochondrial Genome. (1995) Mitochondrial Portraits of Human Populations Using Median Networks. Molecular Biology & Evolution, 19, 1737-1751.īandelt, H.J., Forster, P., Sykes, B.C. (2002) The Emerging Limbs and Twigs of the East Asian mtDNA Tree. Kivisild, T., Tolk, H.V., Parik, J., Wang, Y., et al. (1999) Deep Common Ancestry of Indian and Western-Eurasian Mitochondrial DNA Lineages. Kivisild, T., Bamshad, M.J., Kaldma, K., Metspalu, M., Reidla, M., Laos, S., Parik, J., Watkins, W.S., et al. Journal of Medical Genetics Genomics, 3, 131-135. (2011) Breast Cancer Risk Associated Mitochondrial NADH-Dehydrogenase Subunit-3 (ND3) Polymorphisms (G10398A and T10400C) in Bangladeshi Women. Sultana, G.N.N., Rahman, A., Karim, M.M., Shahinuzzaman, A.D.A., Begum, R. International Journal of Legal Medicine, 118, 294-306. (2004) Mitochondrial DNA Control Region Sequences from Nairobi (Kenya): Inferring Phylogenetic Parameters for the Establishment of a Forensic Database.
Īnita, B., Christine, T.P., Jodi, A.I., Solomon, M., Davy, K.K., Walther, P. International Journal of Legal Medicine, 116, 68- 73. (2002) A New Database of Mitochondrial DNA Hypervariable Regions I and II Sequences from 162 Japanese Individuals. International Journal of Legal Medicine, 118, 137-146. (2003) Single Nucleotide Polymorphisms over the Entire mtDNA Genome That Increase the Forensic Power of mtDNA Testing in Caucasians. Ĭobl, M.D., Just, R.S., O’Callaghan, J.E., Letmanyi, I.H., Peterson, C.T., Irwin, J.A. American Journal of Human Genetics, 69, 615-628. (2001) Paternal Population History of East Asia: Sources, Patterns, and Micro Evolutionary Processes. Karafet, T., Xu, R.L., Du, R.F., Wang, W., Feng, S., Wells, R.S., Redd, A.J., Zegura, S.L. (1989) Statistical Method for Testing the Neutral Mutation Hypothesis by DNA Polymorphism. American Journal of Human Genetics, 48, 370-382. (1991) Population Variation of Human mtDNA Control Region Sequences Detected by Enzymatic Amplification and Sequence-Specific Oligonucleotide Probes. Stoneking, M., Hedgecock, R.G., Higuchi, L. This study first time reports that the comparison of closely related mtDNA sequences can be very useful for improving mtDNA database quality, as well as provide haplotype information for forensic study in mainstream population of Bangladesh. The sequence diversity of 108 Bangladeshi Bengali samples (n = 216 chromosomes) was estimated to be 0.8475 ± 0.13406. The mean pairwise difference between individual was 9.698 ± 1.8658 nucleotides (95% CI 9.67 - 9.69), compared to a mean pairwise difference of 9.890 ± 4.189 nucleotides reported from Northeast Asia and suggested significant differences in the mtDNA composition of the various populations. The Bangladeshi sequences exhibited high variations and low random match probability, indicating for forensic application. Sequence evaluation was performed with validated primers and combined sequence comparison led to the identification of 14 different haplotypes characterized by 37 variable polymorphic sites. Mitochondrial DNA sequences of the entire control region and three coding regions were analyzed in 108 unrelated individuals from three regions of Bangladesh.
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